PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00236.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 361aa    MW: 41359.3 Da    PI: 4.0178
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00236.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.31.5e-112643481297
                   DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                              ++++L+ + +fk ++g  p+++ d++++++ +si ++k+  ++l+eKi +L + f + +    +g++p++ ++ +++if++s+++W
  Sme2.5_00236.1_g00014.1 264 DLAILRSMWQFKCNNGDLPYAHSDELHNYIMDSIpNLKILGNDLTEKIGELEENFYTARML--DGDNPEMPEPIEREIFDFSMRLW 347
                              689*******************************5589*****************999988..9********************** PP

                   DUF573  97 g 97 
                              g
  Sme2.5_00236.1_g00014.1 348 G 348
                              8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.9E-7264348IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLPAGEQVPE NGEILTSSSQ VPDPPSPKAD RNNNRESIDV LETEPPCDES LSEIIKEDEE  60
ESVSSDSLNE RKRSRTDEEE EEGNATEAIS DANKSRRIHE EEGKNELDEQ NGNQDSEHRG  120
NQESEVADEK ERGNQENNNG EEDKNEETEE VEKEELPQCS TAEEEGQKHE LDEHRENAGE  180
EDNVNRINSE KNERGVEESQ QNKGKEVRKA SVKGKRPFLE AIVPNFSKFE RGEPSCTQNL  240
LPNDDTALID HELNNDDNYD YHRDLAILRS MWQFKCNNGD LPYAHSDELH NYIMDSIPNL  300
KILGNDLTEK IGELEENFYT ARMLDGDNPE MPEPIEREIF DFSMRLWGNS EDNIEELMIL  360
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755192e-32HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170159.11e-95PREDICTED: myb-like protein X
TrEMBLM1DAW91e-95M1DAW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000860604e-95(Solanum tuberosum)